Package: KSEAapp 0.99.0
KSEAapp: Kinase-Substrate Enrichment Analysis
Infers relative kinase activity from phosphoproteomics data using the method described by Casado et al. (2013) <doi:10.1126/scisignal.2003573>.
Authors:
KSEAapp_0.99.0.tar.gz
KSEAapp_0.99.0.zip(r-4.7)KSEAapp_0.99.0.zip(r-4.6)KSEAapp_0.99.0.zip(r-4.5)
KSEAapp_0.99.0.tgz(r-4.6-any)KSEAapp_0.99.0.tgz(r-4.5-any)
KSEAapp_0.99.0.tar.gz(r-4.7-any)KSEAapp_0.99.0.tar.gz(r-4.6-any)
KSEAapp_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
KSEAapp/json (API)
| # Install 'KSEAapp' in R: |
| install.packages('KSEAapp', repos = c('https://casecpb.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/casecpb/kseaapp/issues
Datasets:
- KSData - Kinase-Substrate (K-S) Relationship Dataset
- KSEA.Scores.1 - One of the 3 datasets for heatmap plotting
- KSEA.Scores.2 - One of the 3 datasets for heatmap plotting
- KSEA.Scores.3 - One of the 3 datasets for heatmap plotting
- PX - PX dataset for KSEA calculations
Last updated from:cb5fed436a. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 122 | ||
| source / vignettes | OK | 188 | ||
| linux-release-x86_64 | NOTE | 118 | ||
| macos-release-arm64 | NOTE | 149 | ||
| macos-oldrel-arm64 | NOTE | 298 | ||
| windows-devel | NOTE | 72 | ||
| windows-release | NOTE | 69 | ||
| windows-oldrel | NOTE | 77 | ||
| wasm-release | OK | 94 |
Exports:KSEA.BarplotKSEA.CompleteKSEA.HeatmapKSEA.KS_tableKSEA.Scores
Dependencies:bitopscaToolsgplotsgtoolsKernSmooth
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Kinase-Substrate (K-S) Relationship Dataset | KSData |
| The KSEA App Analysis (KSEA Bar Plot Only) | KSEA.Barplot |
| The Complete KSEA App Analysis | KSEA.Complete |
| The KSEA App Analysis (KSEA Heatmap Only) | KSEA.Heatmap |
| The KSEA App Analysis (K-S Dataset Only) | KSEA.KS_table |
| The KSEA App Analysis (KSEA Kinase Scores Only) | KSEA.Scores |
| One of the 3 datasets for heatmap plotting | KSEA.Scores.1 |
| One of the 3 datasets for heatmap plotting | KSEA.Scores.2 |
| One of the 3 datasets for heatmap plotting | KSEA.Scores.3 |
| PX dataset for KSEA calculations | PX |
