Package: KSEAapp 0.99.0

KSEAapp: Kinase-Substrate Enrichment Analysis

Infers relative kinase activity from phosphoproteomics data using the method described by Casado et al. (2013) <doi:10.1126/scisignal.2003573>.

Authors:Danica D. Wiredja

KSEAapp_0.99.0.tar.gz
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KSEAapp.pdf |KSEAapp.html✨
KSEAapp/json (API)

# Install 'KSEAapp' in R:
install.packages('KSEAapp', repos = c('https://casecpb.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/casecpb/kseaapp/issues

Datasets:
  • KSData - Kinase-Substrate (K-S) Relationship Dataset
  • KSEA.Scores.1 - One of the 3 datasets for heatmap plotting
  • KSEA.Scores.2 - One of the 3 datasets for heatmap plotting
  • KSEA.Scores.3 - One of the 3 datasets for heatmap plotting
  • PX - PX dataset for KSEA calculations

On CRAN:

4.64 score 2 stars 22 scripts 159 downloads 2 mentions 5 exports 5 dependencies

Last updated 8 years agofrom:cb5fed436a. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 21 2024
R-4.5-winNOTENov 21 2024
R-4.5-linuxNOTENov 21 2024
R-4.4-winNOTENov 21 2024
R-4.4-macNOTENov 21 2024
R-4.3-winOKNov 21 2024
R-4.3-macOKNov 21 2024

Exports:KSEA.BarplotKSEA.CompleteKSEA.HeatmapKSEA.KS_tableKSEA.Scores

Dependencies:bitopscaToolsgplotsgtoolsKernSmooth

KSEAapp Package Overview

Rendered fromOverview.Rmdusingknitr::rmarkdownon Nov 21 2024.

Last update: 2017-05-01
Started: 2017-05-01