Package: KSEAapp 0.99.0
KSEAapp: Kinase-Substrate Enrichment Analysis
Infers relative kinase activity from phosphoproteomics data using the method described by Casado et al. (2013) <doi:10.1126/scisignal.2003573>.
Authors:
KSEAapp_0.99.0.tar.gz
KSEAapp_0.99.0.zip(r-4.5)KSEAapp_0.99.0.zip(r-4.4)KSEAapp_0.99.0.zip(r-4.3)
KSEAapp_0.99.0.tgz(r-4.4-any)KSEAapp_0.99.0.tgz(r-4.3-any)
KSEAapp_0.99.0.tar.gz(r-4.5-noble)KSEAapp_0.99.0.tar.gz(r-4.4-noble)
KSEAapp_0.99.0.tgz(r-4.4-emscripten)KSEAapp_0.99.0.tgz(r-4.3-emscripten)
KSEAapp.pdf |KSEAapp.html✨
KSEAapp/json (API)
# Install 'KSEAapp' in R: |
install.packages('KSEAapp', repos = c('https://casecpb.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/casecpb/kseaapp/issues
Datasets:
- KSData - Kinase-Substrate (K-S) Relationship Dataset
- KSEA.Scores.1 - One of the 3 datasets for heatmap plotting
- KSEA.Scores.2 - One of the 3 datasets for heatmap plotting
- KSEA.Scores.3 - One of the 3 datasets for heatmap plotting
- PX - PX dataset for KSEA calculations
Last updated 8 years agofrom:cb5fed436a. Checks:OK: 3 NOTE: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 22 2024 |
R-4.5-win | NOTE | Oct 22 2024 |
R-4.5-linux | NOTE | Oct 22 2024 |
R-4.4-win | NOTE | Oct 22 2024 |
R-4.4-mac | NOTE | Oct 22 2024 |
R-4.3-win | OK | Oct 22 2024 |
R-4.3-mac | OK | Oct 22 2024 |
Exports:KSEA.BarplotKSEA.CompleteKSEA.HeatmapKSEA.KS_tableKSEA.Scores
Dependencies:bitopscaToolsgplotsgtoolsKernSmooth
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Kinase-Substrate (K-S) Relationship Dataset | KSData |
The KSEA App Analysis (KSEA Bar Plot Only) | KSEA.Barplot |
The Complete KSEA App Analysis | KSEA.Complete |
The KSEA App Analysis (KSEA Heatmap Only) | KSEA.Heatmap |
The KSEA App Analysis (K-S Dataset Only) | KSEA.KS_table |
The KSEA App Analysis (KSEA Kinase Scores Only) | KSEA.Scores |
One of the 3 datasets for heatmap plotting | KSEA.Scores.1 |
One of the 3 datasets for heatmap plotting | KSEA.Scores.2 |
One of the 3 datasets for heatmap plotting | KSEA.Scores.3 |
PX dataset for KSEA calculations | PX |